PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07448.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 200aa    MW: 22481.3 Da    PI: 4.5451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07448.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-172270355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+++++g
  Rsa1.0_07448.1_g00003.1 22 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALSIKG 70
                             89999888.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-202178IPR016177DNA-binding domain
SMARTSM003807.6E-362184IPR001471AP2/ERF domain
PfamPF008475.4E-112170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-312179IPR001471AP2/ERF domain
PROSITE profilePS5103222.8932178IPR001471AP2/ERF domain
PRINTSPR003672.9E-102233IPR001471AP2/ERF domain
CDDcd000186.38E-222280No hitNo description
PRINTSPR003672.9E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVANDTERSS TKKKKETSTV VYRGARMRSW GKWVSEIREP RKKSRIWLGT FPTAEMAARA  60
HDAAALSIKG SSAILNFPEL SDSLPRPVSL SPADIQAAAT KAAFMNIKTL SLHLEDEPPS  120
PTRCETETSE EKASPQSPST LSEELGEIVE LPTLDNELKK DLALFDSLEG LDWMPPWLEA  180
TQEEFTYPLF QESLWNYEYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-172278360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-162278663ATERF1
3gcc_A1e-162278663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747097.11e-103PREDICTED: ethylene-responsive transcription factor ERF042-like
SwissprotQ52QU12e-77ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLA0A078CJY11e-103A0A078CJY1_BRANA; BnaC04g38070D protein
TrEMBLA0A0D3C2461e-103A0A0D3C246_BRAOL; Uncharacterized protein
STRINGBra034273.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.12e-67ERF family protein